SSSC-associated publications

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SSSC Scientist in Residency Fellow

SSSC Collaborative Projects or Scientists

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Thode, A.M. (2004). Tracking sperm whale (Physeter macrocephalus) dive profiles using a towed passive acoustic array. J. Acoust. Soc. Am. 116(1), 245-253.

Thode, A.M. (2005). Three-dimensional passive acoustic tracking of sperm whales (Physeter macrocephalus) in ray-refracting environments. J. Acoust. Soc. Am. 118, 3575-3584.

Teloni, V., Thode, A.M, and Straley, J. (2006). A note on sperm whales and longline fishery off Southeast Alaska: exploring connections between interaction and acoustic observations. PhD Thesis. April, 2006. 18pp.

Tiemann, C., Thode, A.M., Straley, J., Folkert, K., and O’Connell, V. (2006). Three-dimensional localization of sperm whales using a single hydrophone. J. Acoust. Soc. Am. 120(4), 2355-2365.

Hartman, K.J. and Cox, M.K. (2007). Refinement and testing of a brooke trout bioenergetics model.  T. Am. Fish. Soc. 137, 357-363.

Thode, A.M., Straley, J., Tiemann, C. O., Folkert, K., and O’Connell, V. (2007). Observations of potential acoustic cues that attract sperm whales to longline fishing in the Gulf of Alaska. J. Acoust. Soc. Am. 122(2), 1265-1277.

Cox, K.W. and Heintz, R. (2009). Electrical phase angle as a new method to measure fish condition.  Fish. Bull. 107, 477-487.

Heintz, R. and Cox, K.W. (2009). Seasonal growth and energy dynamics of forage fish in nearshore habitats of Prince William Sound, Alaska. NOAA fisheries, Juneau.

Mathias, D.K., Thode, A., Straley, J., and Folkert, K. (2009). Relationship between sperm whale (Physeter macrocephalus) click structure and size derived from videocamera images of a depredating whale (sperm whale prey acquisition). J. Acoust. Soc. Am. 125(5), 3444-3453.

Thode, A.M., Skinner, J.S., Scott, P., Roswell, J., Straley, J.M., and Folkert, K. (2010). Tracking sperm whales with a towed acoustic vector sensor. J. Acoust. Soc. Am. 128(5), 2681-2694.

Au, W.L., Thode, A., Folkert, K., and Straley, J. (2011). Examining the biosonar process involved with depredation of black cod by sperm whales in the Alaskan long line fishery. J. Acoust. Soc. Am. 129, 2398.

Cohen, C.S., McCann, L. Davis, T., Shaw, L. and Ruiz, G. (2011). Discovery and significance of the colonial tunicate Didemnum vexillum in Alaska. Aquat. Invas. 6(3), 263–271.

Cox, M.K., Heintz, R. and Hartman, K. J. (2011). Measurements of resistance and reactance in fish with the use of bioelectrical impedance analysis: sources of error. Fish. Bull. 109, 34-47.

Mesnick, S.L., Taylor, B.L., Archer, F.I., Martien, K.K., Trevino, S.E., Hancock-Hanser, B.L., Moreno Medina, S.C., Pease, V.L., Robertson, K.M., Straley, J.M., Baird, R.W., Calambokidis, J., Schorr, G.S., Wade, P., Burkanov, V., Lunsford, C.R., Rendell, L., and Morin, P.A. (2011). Sperm whale population structure in the eastern and central North Pacific inferred by the use of single-nucleotide polymorphisms, microsatellites and mitochondrial DNA. Mol. Ecol. Resources. 11, 278-298.

Witteveen, B.H., Straley, J.M., Chenoweth, E., Baker, C.S., Barlow, J., Matkin, C., Gabriele, C.M., Neilson, J., Steel, D., von Ziegesar, O., and Andrews, A.G. (2011). Using movements, genetics and trophic ecology to differentiate inshore from offshore aggregations of humpback whales in the Gulf of Alaska. End. Sp. Res. 14, 217–225.

Cook, J.A., Brochmann, C., Fedorov, V., Talbot, S.L., Taylor, E.B., Väinölä, R., Hoberg, E.P., Kholodova, M., and Magnusson, K.P. (2013). Genetic perspectives on Arctic biodiversity. In: Arctic biodiversity assessment. Conservation of Arctic fauna and flora committee, Copenhagen. Pp. 459-483.

Mathias, D.K., Thode, A.M., Straley, J.M., Calambokidis, J., Schorr, G.S., and Folkert, K. (2012). Acoustic and diving behavior of sperm whales (Physeter macrocephalus) during natural and depredation foraging in the Gulf of Alaska. J. Acoust. Soc. Am. 132(1), 518-532.

Mathias, D.K., Thode, A.M., Straley, J.M., and Andrews, R.D. (2013). Acoustic tracking of sperm whales in the Gulf of Alaska using a two-element vertical array and tags. J. Acoust. Soc. Am. 134(3), 2446-2461.

Cook, J.A., Edwards, S.V., Lacey, E, Guralnick, R.P., Soltis, P.S., Soltis, D.E., Welch, C.K., Bell, K.C., Galbreath, K.E., Himes, C., Allen, J.M. Heath, T.A., Carnaval, A.C., Cooper, K.L., Liu, M, Hanken, J., and Ickert-Bond, S. (2014). Natural history collections as emerging resources for innovative education.  BioScience. 64 (8), 725-734. doi:10.1093/biosci/biu096

Schakner, Z.A., Lunsford, C., Straley, J., Eguchi, T., and Mesnick, S.L. (2014). Using models of social transmission to examine the spread of depredation behavior among sperm whales in the Gulf of Alaska. Plos One. 9(10), 109079-109084.

Straley, J.M., Schorr, G.S., Thode, A.M., Calambokidis, J.A., Lunsford, C.R., Chenoweth, E.M., O’Connell, V.M., and Andrews, R.D. (2014). Depredating sperm whales in the Gulf of Alaska: local habitat use and long distance movements across putative population boundaries. End. Sp. Res. 24, 125-135.

Thode, A.M., Wild, L.A., Mathias, D.K., Straley, J.M., and Lunsford, C. (2014). A comparison of acoustic and visual metrics of sperm whale longline depredation. J. Acoust. Soc. Am. 135(5), 3086-3100.

O’Connell, V., Straley, J.M., Liddle, J.B., Wild, L.A., Behnken, L., Falvey, D., Thode, A.M. (2015). Testing a passive deterrent on longlines to reduce sperm whale depredation in the Gulf of Alaska. ICES J. Mar. Sci. 72(5), 1667-1672. doi: 10.1093/icesjms/fsv014

Sorte, C.J.B., Bracken, M.E.S. (2015). Warming and elevated CO2 interact to drive rapid shifts in marine primary productivity. PLoS ONE. 10(12). doi:10.1371/journal.pone.0145191

Straley, J.M., O’Connell, V., Liddle, J.B., Thode, A.M., Wild, L.A., Behnken, L., Falvey, D., Lunsford, C. (2015). Southeast Alaska Sperm Whale Avoidance Project (SEASWAP): a successful collaboration among scientists and industry to study depredation in Alaskan waters. ICES J. Mar. Sci. 72(5), 1598-1609. doi: 10.1093/icesjms/fsv090

Thode, A.M., Straley, J.M., O’Connell, V., Behnken, L., Falvey, D., Mathias. D.K., Wild, L.A., Calambokidis, J., Schorr, G.S., Andrews, R.D., Liddle, J.B., Lunsford, C. (2015). Cues, creaks, and decoys: using passive acoustic monitoring as a tool for studying sperm whale depredation. ICES J. Mar. Sci. 72(5), 1621-1637. doi: 10.1093/icesjms/fsv024

Vlietstra, L., Bell, L., and Condon, J. (2015). Kelp, climate, and more in Sitka Sound. U.S. Coast Guard Acad. Alum. Ass. Bull. 84, 44-47.

Bell, L.E., Bluhm, B.B., and Iken, K. (2016). The influence of terrestrial matter in marine food webs of the Beaufort Sea shelf and slope. Mar. Ecol. Prog. Ser. 550, 1-24.

Endlich, S., Penco, R. (2016). Effective field theory approach to tidal dynamics of spinning astrophysical systems. Phys. Rev. D(6-93), 1-6.

Garcia-Saenze, S., Hinterbuchler, K., Joyce, A., Mitsou, E., Rosen, R.A. (2016). A No-go for partially massless spin-2 Yang-Mills. J. High Energy Phys(02-043), 1-11.

Gratia, P., Hu, W., Joyce, A., Ribeiro, H.R. (2016)Double Screening. J. High Energy Phys(06-033), 1-26.

Hinterbichler, K., and Joyce, A. (2016). Manifest duality for partially massless higher spins. J. High Energy Phys. 9, 141.

Hope, A.G., Malaney, J.L., Bell, K.C., Salazar-Miralles, F., Chavez, A.S., Barber, B.R., and Cook, J.A. (2016). Revision of widespread red squirrels (genus:Tamiasciurus) highlights the complexity of speciation within North American forests. Mol. Phylogenet. Evol. 100, 170-182.

McGowan, J., Beger, M., Lewison, R.L., Harcourt, R., Campbell, H., Priest, M., Dwyer, R.G., Lin, H.Y., Lentini, P., Dudgeon, C., and McMahon, C. (2016). Integrating research using animal‐borne telemetry with the needs of conservation management. J. Appl. Ecol. 1-7. doi: 10.1111/1365-2664.12755

Meerburg, P.D., Münchmeyer, M., Wandelt, B. (2016). Joint resonant CMB power spectrum and bispectrum estimation. Phys. Rev. D(4-93), 1-17.

Werth A.J., and Potvin. J. (2016). Baleen hydrodynamics and morphology of cross-flow filtration in balaenid whale suspension feeding. PLoS One. 11(2). doi:10.1371/journal.pone.0150106

Werth, A.J., Straley, J.M., and Shadwick, R.E. (2016). Baleen wear reveals intraoral water flow patterns of mysticete filter feeding. J. Morphol. 277(4), 453-471. doi:10.1002/jmor.20510

Vlietstra, L.S., Mrakovcich, K.L., Futch, V.C., and Stutzman, B.S. (2016). Anthropogenic climate change in marine and environmental science programs in the United States. J. Coll. Sci. Teach. 45(5).

Thode, A., Wild, L., Straley, J., Barnes, D., Bayless, A., O’Connell, V., Oleson, E., Sarkar, J., Falvey, D., Behnken, L., Martin, S. (2016). Using line acceleration to measure false killer whale (Pseudorca crassidens) click and whistle source levels during pelagic longline depredation. J. Acoust. Soc. Am. 140(5), 3941-3951.

Endlich, S., Penco, R. (2017). A modern approach to superradiance. J. High Energy Phys(05-052), 1-32

Hinterbichler, K., Joyce, A., Khoury, J. (2017) Inflation in Flatland. J. Cosmol. Astropart. Phys(01-044), 1-29.

Stensvold, M.C., and Farrar, D.R. (2017). Genetic diversity in the worldwide Botrychium lunaria (Ophioglossaceae) complex, with new species and new combinations. Brittonia 69(2), 148-175.

Straley, J.M., Andrews, R.D., Schorr, G.S., Thode, A.M., Calambokidis, J.A., Lunsford, C.R., Chenoweth, E.M., O’Connell, V.M.  Local movements, habitat use, and long distance migrations across stock boundaries by satellite tagged sperm whales in the North Pacific. Manuscript submitted for publication.